- Details
- Published: Monday, 30 September 2013 14:06
Specific improvements or additions in the new release include:
- Cell image synthesis
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- Improved vesicular organelles model
- Eliminate object/object and object/boundary overlap during generation
- Ability to combine models learned from images of different resolution, and synthesize images at desired resolution
- Ability to synthesis random walks in shape space from diffeomorphic models of cell and nuclear shape
- Including directed random walks using Willmore energy and shape space density
- Improved vesicular organelles model
- Model training
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- New capabilities for cell and nuclear shape model learning
- Build nuclear models from images without nuclear marker
- Build joint diffeomorphic models of cell and nuclear shape
- Per-cell representations for easy model building and comparison
- New capabilities for cell and nuclear shape model learning
- Other
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- Export to SBML-spatial and mesh formats for interfacing with tools such as CellBlender and VCell
- Parallelization of model learning pipeline
- Reporter tools
- Assess learned models
- Compare models
- Compare per cell parameters within or across models