Agenda: Cell Modeling Workshop 2016
Workshop details: Home Agenda Instructors
This agenda is tentative and subject to change.
Wednesday, June 1 | |
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8:30 - 9:00 | Welcome and Introduction |
9:00 - 10:00 | Introduction to Spatial Modeling with MCell (part 1) |
10:00 - 10:15 | Break |
10:15 - 11:15 | Introduction to Spatial Modeling with MCell (part 2) |
11:15 - 12:00 | CellBlender Introduction and Demo |
12:00 - 1:00 | Lunch Break (lunch will be provided) |
1:00 - 5:00 | Hands-on tutorials in PSC's Computer Training Center |
Thursday, June 2 | |
8:30 - 10:15 | Introduction to Rule-Based Modeling (James Faeder) |
10:15 - 10:30 | Break |
10:30 - 12:00 | Basic models in RuleBender - Lotka-Volterra, Polarization (James Faeder) |
12:00 - 1:00 | Lunch |
1:00 - 1:30 | CaMKII model in RuleBender (Cihan Kaya) |
1:30 - 1:45 | Modeling DA neurons (Cihan Kaya) |
1:45 - 2:15 | Atomizer demo and models (Jose Juan Tapia) |
2:15-2:45 | Visualization demo (John)Visualization demo (John) |
2:45-3:00 | Break |
3:00-5:00 | Clustering and confinement models (Sanjana) |
Friday, June 3 | |
8:30 - 9:30 | Introduction to Generative Modeling with CellOrganizer |
9:30 - 10:00 | Working with Diffeomorphic Models |
10:00 - 10:30 | Break |
10:30 - 11:00 | Training of Ratio Model and Protein Patterns |
11:00 - 12:00 | Training of CellOrganizer Models - From Images to Models |
12:00 - 1:00 | Lunch Break (lunch will be provided) |
1:00 - 5:00 | Hands-on tutorials in Computer Training Center and/or work on your own projects |