GNM representation and ribbon diagrams used in the iGNM DB

GNM representation and ribbon diagrams used in the iGNM DB

Li H, Chang YY, Yang LW, Bahar I. (2016) iGNM 2.0: the Gaussian network model database for biomolecular structural dynamics. Nucleic acids research. 44(D1):D415-22. doi: 10.1093/nar/gkv1236. PMID:26582920

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MD simulations of the GlyR pore

MD simulations of the GlyR pore

Jun I, Cheng MH, Sim E, Jung J, Suh BL, Kim Y, Son H, Park K, Kim CH, Yoon JH, Whitcomb DC, Bahar I, Lee MG. (2016) Pore dilatation increases the bicarbonate permeability of CFTR, ANO1 and glycine receptor anion channels. The Journal of physiology. 594(11):2929-55. doi: 10.1113/JP271311. PMID:26663196

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Network reconstruction of dendrites and axons

Network reconstruction of dendrites and axons

Lee WCA, Bonin V, Reed M, Graham BJ, Hood G, Glattfelder K, Reid RC. (2016) Anatomy and function of an excitatory network in the visual cortex. Nature. 532(7599):370-4. doi: 10.1038/nature17192. PMID:27018655

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Reconstruction of hippocampal neuropil

Reconstruction of hippocampal neuropil

Bartol TM, Keller DX, Kinney JP, Bajaj CL, Harris KM, Sejnowski TJ, Kennedy MB. (2015) Computational reconstitution of spine calcium transients from individual proteins. Frontiers in synaptic neuroscience. 7:17. doi: 10.3389/fnsyn.2015.00017. PMID:26500546

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Inhibition of Peroxidase Activity of Cytochrome c

Inhibition of Peroxidase Activity of Cytochrome c

Bakan A, Kapralov AA, Bayir H, Hu F, Kagan VE, Bahar I. (2015) Inhibition of Peroxidase Activity of Cytochrome c: De Novo Compound Discovery and Validation. Molecular pharmacology. 88(3):421-7. doi: 10.1124/mol.115.097816. PMID:26078313

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Spring force erosion

Spring force erosion

Morgan JL, Berger DR, Wetzel AW, Lichtman JW. (2016) The Fuzzy Logic of Network Connectivity in Mouse Visual Thalamu. Cell. 165(1):192-206. doi: 10.1016/j.cell.2016.02.033. PMID:27015312

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Signal transduction network

Signal transduction network

Donovan RM, Tapia JJ, Sullivan DP, Faeder JR, Murphy RF, Dittrich M, Zuckerman DM. (2016) Unbiased Rare Event Sampling in Spatial Stochastic Systems Biology Models Using a Weighted Ensemble of Trajectories. PLoS computational biology. 12(2):e1004611. doi: 10.1371/journal.pcbi.1004611. PMID:26845334

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Publications

List of publications that acknowledged the NIGMS MMBioS award P41GM103712.

2017      2016      2015     2014    2013


 

2017

  • Ambler R, Ruan X, Murphy RF and Wülfing C. (2017) Systems Imaging of the immune synapse. The Immune Synapse: Methods and Protocols, Methods in Molecular Biology, vol. 1584 (C. T. Baldari and M. L. Dustin, eds.), in press. DBP4 TRD3

  • Gretzmeier C, Eiselein S, Johnson GR, Engelke R, Nowag H, Zarei M, Küttner V, Becker AC, Rigbolt KTG, Høyer-Hansen M, Andersen JS, Münz C, Murphy RF and Dengjel J (2017) Degradation of protein translation machinery by amino acid starvation-induced macroautophagy. Autophagy. in press. CSP29 TRD3

  • Gur M, Cheng MH, Zomot E, Bahar I.(2017)Effect of Dimerization on the Dynamics of Neurotransmitter: Sodium Symporters. J Phys Chem B. doi: 10.1021/acs.jpcb.6b09876. [Epub ahead of print] TRD1
  • Johnson GR, Kangas JD, Dovzhekno A, Trojok R, Voigt K, Majarian TD, Palme K and Murphy RF.   (2017)  A Method for Characterizing Phenotypic Changes in Highly Variable Cell Populations and its Application to High Content Screening of Arabidopsis thaliana Protoplasts. Cytometry Part A, in press. CSP12 TRD3

2016

2015

2014

2013

2012