Agenda: Computational Methods for Spatially Realistic Microphysiological Simulations 2014
Workshop details: Home
This agenda is tentative and subject to change.
| Monday, April 28 | |
|---|---|
| 8:30 - 9:00 | Welcome and Introduction |
| 9:00 - 10:00 | Introduction to Spatial Modeling with MCell (part 1) (PDF) |
| 10:00 – 10:15 | Break |
| 10:15 – 11:15 | Introduction to Spatial Modeling with MCell (part 2) (PDF) |
| 11:15 – 12:00 | CellBlender Introduction and Demo |
| 12:00 - 1:00 | Lunch Break (lunch will be provided) |
| 1:00 - 5:00 | Hands-on tutorials in PSC's Computer Training Center |
| Tuesday, April 29 | |
| 8:30 – 10:00 | Introduction to Rule-Based Modeling (PDF) |
| 10:00 – 10:30 | Break |
| 10:30 – 12:00 | RuleBender Introduction and Demo |
| 12:00 – 1:00 | Lunch Break (lunch will be provided) |
| 1:00 - 5:00 | Hands-on tutorials in Computer Training Center and/or work on your own projects (PDF) |
| Wednesday, April 30 | |
| 8:30 – 9:30 | Introduction to Generative Modeling with CellOrganizer (PDF) |
| 9:30 – 10:00 | Working with Diffeomorphic Models (PDF) |
| 10:00 – 10:30 | Break |
| 10:30 – 11:00 | Training of Ratio Model and Protein Patterns |
| 11:00 – 12:00 | Training of CellOrganizer Models - From Images to Models (PDF) |
| 12:00 – 1:00 | Lunch Break (lunch will be provided) |
| 1:00 – 5:00 | Hands-on tutorials in Computer Training Center and/or work on your own projects (PDF) |