Agenda: Computational Methods for Spatially Realistic Microphysiological Simulations 2013

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Monday, May 20
8:00 - 9:00 Light Continental Breakfast
9:00 - 9:30 Welcome and Introduction (PDF, video)
9:30 - 10:30 Introduction to Microphysiological Modeling using MCell (PDF, video)
10:30 – 10:45 Break
10:45 – 12:00 Introduction to CellBlender and Model Geometry Creation (video)
12:00 – 1:00 Lunch Break (lunch will be provided)
1:00 - 5:00 Hands-on tutorials in PSC's Computer Training Center
Tuesday, May 21
8:00 - 9:00 Light Continental Breakfast
9:00 – 10:30 Introduction to Monte Carlo Methods for Diffusion and Reaction in Solution (PDF, video)
10:30 – 10:45 Break
10:45 – 12:00 Introduction to Rule Based Modeling with MCell (PDF, video 1, video 2)
12:00 – 1:00 Lunch Break (lunch will be provided)
1:00 - 5:00 Hands-on tutorials in Computer Training Center and/or work on your own projects
Wednesday, May 22
8:00 - 9:00 Light Continental Breakfast
9:00 – 10:30 Advanced MCell topics (surface reactions, surface regions, time dependent rates, checkpointing etc.)
10:30 – 10:45 Break
10:45 – 12:00 Q/A
12:00 – 1:00 Lunch Break (lunch will be provided)
1:00 – 5:00 Hands-on tutorials in Computer Training Center and/or work on your own projects

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