Agenda: Computational Methods for Spatially Realistic Microphysiological Simulations 2013
Workshop details: Home Instructors
Monday, May 20 | |
---|---|
8:00 - 9:00 | Light Continental Breakfast |
9:00 - 9:30 | Welcome and Introduction (PDF, video) |
9:30 - 10:30 | Introduction to Microphysiological Modeling using MCell (PDF, video) |
10:30 – 10:45 | Break |
10:45 – 12:00 | Introduction to CellBlender and Model Geometry Creation (video) |
12:00 – 1:00 | Lunch Break (lunch will be provided) |
1:00 - 5:00 | Hands-on tutorials in PSC's Computer Training Center |
Tuesday, May 21 | |
---|---|
8:00 - 9:00 | Light Continental Breakfast |
9:00 – 10:30 | Introduction to Monte Carlo Methods for Diffusion and Reaction in Solution (PDF, video) |
10:30 – 10:45 | Break |
10:45 – 12:00 | Introduction to Rule Based Modeling with MCell (PDF, video 1, video 2) |
12:00 – 1:00 | Lunch Break (lunch will be provided) |
1:00 - 5:00 | Hands-on tutorials in Computer Training Center and/or work on your own projects |
Wednesday, May 22 | |
---|---|
8:00 - 9:00 | Light Continental Breakfast |
9:00 – 10:30 | Advanced MCell topics (surface reactions, surface regions, time dependent rates, checkpointing etc.) |
10:30 – 10:45 | Break |
10:45 – 12:00 | Q/A |
12:00 – 1:00 | Lunch Break (lunch will be provided) |
1:00 – 5:00 | Hands-on tutorials in Computer Training Center and/or work on your own projects |