Agenda: Computational Methods for Spatially Realistic Microphysiological Simulations 2014

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 This agenda is tentative and subject to change.

 

Monday, April 28
8:30 - 9:00 Welcome and Introduction
9:00 - 10:00 Introduction to Spatial Modeling with MCell (part 1) (PDF)
10:00 – 10:15 Break
10:15 – 11:15 Introduction to Spatial Modeling with MCell (part 2) (PDF)
11:15 – 12:00 CellBlender Introduction and Demo
12:00 - 1:00 Lunch Break (lunch will be provided)
1:00 - 5:00 Hands-on tutorials in PSC's Computer Training Center
 
Tuesday, April 29
8:30 – 10:00 Introduction to Rule-Based Modeling (pptx)
10:00 – 10:30 Break
10:30 – 12:00 RuleBender Introduction and Demo
12:00 – 1:00 Lunch Break (lunch will be provided)
1:00 - 5:00 Hands-on tutorials in Computer Training Center and/or work on your own projects (PDF)
 
Wednesday, April 30
8:30 – 9:30 Introduction to Generative Modeling with CellOrganizer (PDF)
9:30 – 10:00 Working with Diffeomorphic Models (pptx)
10:00 – 10:30 Break
10:30 – 11:00 Training of Ratio Model and Protein Patterns
11:00 – 12:00 Training of CellOrganizer Models - From Images to Models (pptx)
12:00 – 1:00 Lunch Break (lunch will be provided)
1:00 – 5:00 Hands-on tutorials in Computer Training Center and/or work on your own projects (pptx)