Agenda: Cell Modeling Workshop 2016

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 This agenda is tentative and subject to change.

 

Wednesday, June 1
8:30 - 9:00 Welcome and Introduction
9:00 - 10:00 Introduction to Spatial Modeling with MCell (part 1)
10:00 - 10:15 Break
10:15 - 11:15 Introduction to Spatial Modeling with MCell (part 2)
11:15 - 12:00 CellBlender Introduction and Demo
12:00 - 1:00 Lunch Break (lunch will be provided)
1:00 - 5:00 Hands-on tutorials in PSC's Computer Training Center
 
Thursday, June 2
8:30 - 10:15 Introduction to Rule-Based Modeling (James Faeder)
10:15 - 10:30 Break
10:30 - 12:00 Basic models in RuleBender - Lotka-Volterra, Polarization (James Faeder)
12:00 - 1:00 Lunch
1:00 - 1:30 CaMKII model in RuleBender (Cihan Kaya)
1:30 - 1:45 Modeling DA neurons (Cihan Kaya)
1:45 - 2:15 Atomizer demo and models (Jose Juan Tapia)
2:15-2:45 Visualization demo (John)Visualization demo (John)
2:45-3:00 Break
3:00-5:00 Clustering and confinement models (Sanjana)
 
Friday, June 3
8:30 - 9:30 Introduction to Generative Modeling with CellOrganizer
9:30 - 10:00 Working with Diffeomorphic Models
10:00 - 10:30 Break
10:30 - 11:00 Training of Ratio Model and Protein Patterns
11:00 - 12:00 Training of CellOrganizer Models - From Images to Models
12:00 - 1:00 Lunch Break (lunch will be provided)
1:00 - 5:00 Hands-on tutorials in Computer Training Center and/or work on your own projects